Stem-loop sof-MIR159b

Accession

MI0001757

Description

Saccharum officinarum sof-MIR159b precursor miRNA

Literature search

7 open access papers mention sof-MIR159b
(39 sentences)

Sequence

ccugaugcuuggauuugaagcggagcuccuaucauuccaaugaagggccguucugaagggugguuccgcugcucguucaugguucccacuauccuaucucaucauguauguguguauguauuuucggagagggaggagaggagcuagacucucacgguggucgucuuugagauaggcuugugguuugcaugaccgaggagcugcaccguccccuugcuggccgcucUUUGGAUUGAAGGGAGCUCUGcauccugaaccauccaucc
...((((..(((.((.((.(((((((((((.(((.(((((.((..(((((.....(((((((((.(.(((.((((.(((((....((((...(((((((((............(.(((.(((.((((((((..((........))...))))).))).)))))))..)))))))))...))))....))))).)))).))).).))))..)))))..)))))..)).))))).))).))))))))))).))..)).)))..)))).

Structure

ccu    cu   a  -u  a           a   u     u  ag     uucug     --    u c   g    u     guuc    uau         ucauguaugugu u   u   u   -     -gg  gag 
   gaug  ugg uu  ga gcggagcuccu uca uccaa ga  ggccg     aaggg  uggu c gcu cucg ucaug    ccac   ccuaucuca            g aug auu ucg gagag   ag   a
   ||||  ||| ||  || ||||||||||| ||| ||||| ||  |||||     |||||  |||| | ||| |||| |||||    ||||   |||||||||            | ||| ||| ||| |||||   ||    
   cuac  acc ag  cu cGUCUCGAGGG AGU AGGUU cu  ccggu     uuccc  gcca g cga gagc aguac    ggug   ggauagagu            c ugc ugg ggc cucuc   uc   g
--c    cu   a  uc  a           A   U     U  cg     ---cg     cu    c u   g    c     guuu    uuc         ----------uu -   -   u   a     aga  gag 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR159b

• Accession: MIMAT0001659
• Description: Saccharum officinarum sof-miR159b mature miRNA
• Sequence: 227 - UUUGGAUUGAAGGGAGCUCUG - 247
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13