Stem-loop zma-MIR399d

Accession

MI0001805

Description

Zea mays zma-MIR399d precursor miRNA

Literature search

22 open access papers mention zma-MIR399d
(68 sentences)

Sequence

663 reads, 409 reads per million, 118 experiments

ucaaggugagaaucacaGUGUGGCUCUCCUCUGGCAUGaaggcgcggcugagaggcacgaacaguuucuggccuuccccugccaaUGCCAAAGGAGAGCUGCCCUGccauucguuagcccugcaa
.((.(((..((((..(((.(((((((((((.((((((...((((.((....(((((..(((....)))..)))))..)))))).)))))).))))))))))).)))..))))....))).))...

Structure

--u  a   --ga    ca   U           C      Gaa    c  cuga     ac   c 
   ca ggu    gaau  caG GUGGCUCUCCU UGGCAU   ggcg gg    gaggc  gaa a
   || |||    ||||  ||| ||||||||||| ||||||   |||| ||    |||||  |||  
   gu ccg    cuua  GUC CGUCGAGAGGA ACCGUa   ccgu cc    uuccg  cuu g
aac  c   auug    cc   C           A      --a    -  --cc     gu   u 

Annotation confidence High

Genome context

chr3: 192096065-192096189 [+]

Mature zma-miR399d-5p

• Accession: MIMAT0015172
• Description: Zea mays zma-miR399d-5p mature miRNA
• Sequence: 18 - GUGUGGCUCUCCUCUGGCAUG - 38
• Evidence: experimental ; Illumina [2]

Mature zma-miR399d-3p

• Accession: MIMAT0001707
• Description: Zea mays zma-miR399d-3p mature miRNA
• Sequence: 86 - UGCCAAAGGAGAGCUGCCCUG - 106
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13