Stem-loop zma-MIR399e

Accession

MI0001806

Description

Zea mays zma-MIR399e precursor miRNA

Literature search

25 open access papers mention zma-MIR399e
(73 sentences)

Sequence

332 reads, 633 reads per million, 2 experiments

augccuaagcuguccaguuucaGGGCUUCUCUUUCUUGGCAGGgaagcaugagaugccauagcucucugcucucuucaacccucUGCCAAAGGAGAGUUGCCCUGuaacaggacucagcuuaug
.....((((((((((.(((.((((((..((((((.(((((((((.((((.((((.((....))))))))))..........))))))))).))))))..)))))).))).))))..))))))..

Structure

augcc      --    a   u      UU      C         ---------a    u    u  c 
     uaagcu  gucc guu caGGGC  CUCUUU UUGGCAGGg          agca gaga gc a
     ||||||  |||| ||| ||||||  |||||| |||||||||          |||| |||| ||  
     auucga  cagg caa GUCCCG  GAGAGG AACCGUcuc          ucgu cucu cg u
---gu      cu    a   u      UU      A         ccaacuucuc    -    -  a 

Annotation confidence Not enough data

Genome context

chr2: 16763309-16763432 [-]

Mature zma-miR399e-5p

• Accession: MIMAT0015173
• Description: Zea mays zma-miR399e-5p mature miRNA
• Sequence: 23 - GGGCUUCUCUUUCUUGGCAGG - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR399e-3p

• Accession: MIMAT0001708
• Description: Zea mays zma-miR399e-3p mature miRNA
• Sequence: 85 - UGCCAAAGGAGAGUUGCCCUG - 105
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13