Stem-loop zma-MIR169j

Accession

MI0001832

Description

Zea mays zma-MIR169j precursor miRNA

Literature search

31 open access papers mention zma-MIR169j
(218 sentences)

Sequence

2330 reads, 2595 reads per million, 170 experiments

gcgauaagagucuguccagaUAGCCAAGGAUGACUUGCCUGuggcuucuuggcuuggcuuggcucgggcaaaaccuugugcacguuuuauugcucgccucguggccucgaucacaGGCAGUCUCCUUGGCUAGuccgggcgggccccuuau
...(((((.((((((((.((((((((((((.((((.((((((((..((..((((..((..(((..(((((((((.........)))...)))))))))..))))))..))))))))))))))))))))))).))).))))))))..)))))

Structure

gcg     -a        a   -         U    U        cu  uu    ug  uu   uc      ---   cuu 
   auaag  gucugucc gaU AGCCAAGGA GACU GCCUGugg  uc  ggcu  gc  ggc  gggcaa   aac   g
   |||||  |||||||| ||| ||||||||| |||| ||||||||  ||  ||||  ||  |||  ||||||   |||   u
   uauuc  cgggcggg cuG UCGGUUCCU CUGA CGGacacu  ag  ccgg  ug  ccg  cucguu   uug   g
---     cc        c   A         -    -        --  cu    --  cu   --      auu   cac 

Annotation confidence High

Genome context

chr2: 198435908-198436058 [+]

Mature zma-miR169j-5p

• Accession: MIMAT0001734
• Description: Zea mays zma-miR169j-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR169j-3p

• Accession: MIMAT0015197
• Description: Zea mays zma-miR169j-3p mature miRNA
• Sequence: 116 - GGCAGUCUCCUUGGCUAG - 133
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13