Stem-loop zma-MIR159d

Accession

MI0001812

Description

Zea mays zma-MIR159d precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

32 open access papers mention zma-MIR159d
(157 sentences)

Sequence

65 reads, 1381 reads per million, 12 experiments

aagaagaugccgaucgaucgaaGAGCUCCCUUCGAUCCAAUCCaggagggaaaguggucggcugcagcugccgguucauggauaccucucuggugcagcaauggccgagaugcucaccugcacuugcaugggugugcaugacccgggagacgaaccgaccaucaucuuucccucgugCUUGGAUUGAAGGGAGCUCCUcucucucucucucucuuau
(((((((....((..((..((.((((((((((((((((((..((.((((((((((((((((......((.((((.(((((.((((((....(((((((....(((......)))...))))))).....)))))).))))).)))).)).....)))))))....))))))))).)).)))))))))))))))))).))..))..))))).))))..

Structure

--    -   ugcc  uc  uc  a                  UC  g         ----       cugcag  g    u     g      -cucu       caau   cg 
  aaga aga    ga  ga  ga GAGCUCCCUUCGAUCCAA  Ca gagggaaag    uggucgg      cu ccgg ucaug auaccu     ggugcag    ggc  a
  |||| |||    ||  ||  || ||||||||||||||||||  || |||||||||    |||||||      || |||| ||||| ||||||     |||||||    |||   
  uucu ucu    cu  cu  cU CUCGAGGGAAGUUAGGUU  gu cucccuuuc    accagcc      ga ggcc aguac uguggg     ucacguc    ucg  g
ua    c   ----  cu  cu  C                  -C  g         uacu       -aagca  g    c     g      uacgu       -cac   ua 

Annotation confidence Not enough data

Genome context

chr8: 27675686-27675902 [+]

Mature zma-miR159d-5p

• Accession: MIMAT0015179
• Description: Zea mays zma-miR159d-5p mature miRNA
• Sequence: 23 - GAGCUCCCUUCGAUCCAAUCC - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR159d-3p

• Accession: MIMAT0001714
• Description: Zea mays zma-miR159d-3p mature miRNA
• Sequence: 178 - CUUGGAUUGAAGGGAGCUCCU - 198
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13