Stem-loop zma-MIR166l

Accession

MI0001841

Description

Zea mays zma-MIR166l precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

33 open access papers mention zma-MIR166l
(190 sentences)

Sequence

115612 reads, 348977 reads per million, 11 experiments

aaagaacgggaggaggguuucugGAAUGGAGGCUGGUCCAAGAuccuuagguguuaaagcauuauauugccuuguuucugguuuuguguuugagaucUCGGACCAGGCUUCAUUCCUCaaacccacgcucccgacac
......(((((((.((((((..(((((((((.(((((((.(((((.((((((((....))))((((..(((........)))..)))).))))))))).))))))).)))))))))..)))))).).))))))....

Structure

aaagaa      - a      cu         G       A     c    guguuaaagcau    uu   uug 
      cgggag g ggguuu  gGAAUGGAG CUGGUCC AGAuc uuag            uaua  gcc   u
      |||||| | ||||||  ||||||||| ||||||| ||||| ||||            ||||  |||    
      gcccuc c cccaaa  CCUUACUUC GACCAGG Ucuag aguu            gugu  ugg   u
--caca      g a      CU         G       C     -    -----------u    uu   ucu 

Annotation confidence High

Genome context

chr3: 91435335-91435471 [+]

Mature zma-miR166l-5p

• Accession: MIMAT0015203
• Description: Zea mays zma-miR166l-5p mature miRNA
• Sequence: 24 - GAAUGGAGGCUGGUCCAAGA - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR166l-3p

• Accession: MIMAT0001743
• Description: Zea mays zma-miR166l-3p mature miRNA
• Sequence: 98 - UCGGACCAGGCUUCAUUCCUC - 118
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13