Stem-loop ptc-MIR395c

Accession

MI0002317

Description

Populus trichocarpa ptc-MIR395c precursor miRNA

Literature search

5 open access papers mention ptc-MIR395c
(7 sentences)

Sequence

102 reads, 2.0 reads per million, 9 experiments

guguccccuagaGUUCCUCUGAGCACUUCAuugggaaucuucgauuaaaugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.(((((((....(((..((((......)))))))))))))).))))))))))))))))))))..)).).))

Structure

g  u c  ua                    u       cuuc   ua    aa 
 ug c cc  gaGUUCCUCUGAGCACUUCA ugggaau    gau  aaug  a
 || | ||  |||||||||||||||||||| |||||||    |||  ||||   
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuua    cua  uuau  g
-  u u  uc                    C       ----   --    ga 

Annotation confidence Medium

Genome context

CM000342.2: 8406701-8406801 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR395c

Mature ptc-miR395c-5p

• Accession: MIMAT0055629
• Description: Populus trichocarpa ptc-miR395c-5p mature miRNA
• Sequence: 13 - GUUCCUCUGAGCACUUCA - 30
• Evidence: experimental ; unknown

Mature ptc-miR395c-3p

• Accession: MIMAT0002023
• Description: Populus trichocarpa ptc-miR395c-3p mature miRNA
• Sequence: 72 - CUGAAGUGUUUGGGGGAACUC - 92
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604