Stem-loop zma-MIR171i

Accession

MI0001838

Description

Zea mays zma-MIR171i precursor miRNA

Literature search

19 open access papers mention zma-MIR171i
(50 sentences)

Sequence

1789 reads, 375 reads per million, 119 experiments

cugguuggcugagagagugcgaUGUUGGCACGGUUCAAUCAAAucgccggccggguugacuuguUGAUUGAGCCGUGCCAAUAUCacaaccuucucuagccuag
......(((((((((.(((.((((((((((((((((((((((.(((((.....)).)))....)))))))))))))))))))))).).)).))))).))))...

Structure

cugguu    -     a  - c                      ---A   -  g 
      ggcu gagag gu g gaUGUUGGCACGGUUCAAUCAA    ucg cc g
      |||| ||||| || | ||||||||||||||||||||||    ||| || c
      ccga cucuu ca c CUAUAACCGUGCCGAGUUAGUu    agu gg c
---gau    u     c  a a                      guuc   u  g 

Annotation confidence Not enough data

Genome context

chr1: 278093492-278093595 [+]

Mature zma-miR171i-5p

• Accession: MIMAT0015201
• Description: Zea mays zma-miR171i-5p mature miRNA
• Sequence: 23 - UGUUGGCACGGUUCAAUCAAA - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR171i-3p

• Accession: MIMAT0001740
• Description: Zea mays zma-miR171i-3p mature miRNA
• Sequence: 65 - UGAUUGAGCCGUGCCAAUAUC - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13