Accession
MI0001810
Description
Zea mays
zma-MIR159b precursor miRNA
Literature search
31 open access papers mention zma-MIR159b
(164 sentences)
(164 sentences)
Sequence
5772
reads,
27471
reads per million, 26 experiments
uagacggucuggucuuaaggcgGUGCUCCCUUCAAACCAAUAAacggucgaucugaugggugguacagcugcucguucaugguucccacugucccaucucaucagagagagagagagaugcuugagaugggcuugugguuugcaugaccgaggagcugcacguccccuucguugaccgcugUUUGGAUUGAAGGGAGCUCUGcaucuuggucccaagacuu
.....(((((((..(((((((((.(((((((((((.((((..(.((((((((..((.(((..((.(((((.((((.(((((....((((...(((((((((.((..............))..)))))))))...))))....))))).)))).))))).))...))).)))))))))).)..)))).))))))))))).))))..)))))..)).))))).
.....(((((((..(((((((((.(((((((((((.((((..(.((((((((..((.(((..((.(((((.((((.(((((....((((...(((((((((.((..............))..)))))))))...))))....))))).)))).))))).))...))).)))))))))).)..)))).))))))))))).))))..)))))..)).))))).
Structure
uagac - uc -- U A UA a cu u -ug a g u guuc ugu -u gagaga
ggucu gg uuaag gcgG GCUCCCUUCAA CCAA A cggucgau ga ggg gu cagcu cucg ucaug ccac cccaucuca ca g
||||| || ||||| |||| ||||||||||| |||| | |||||||| || ||| || ||||| |||| ||||| |||| ||||||||| ||
ucaga cc gguuc cGUC CGAGGGAAGUU GGUU u gccaguug cu ccc ca gucga gagc aguac ggug ggguagagu gu a
----u a cu ua U A Ug c -- u cug c g c guuu uuc uc agagag
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr8: 10950933-10951153 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR159b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature zma-miR159b-5p
| Accession | MIMAT0015177 |
| Description | Zea mays zma-miR159b-5p mature miRNA |
| Sequence | 23 - GUGCUCCCUUCAAACCAAUAA - 43 |
| Evidence |
experimental
Illumina [2] |
Mature zma-miR159b-3p
| Accession | MIMAT0001712 |
| Description | Zea mays zma-miR159b-3p mature miRNA |
| Sequence | 182 - UUUGGAUUGAAGGGAGCUCUG - 202 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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