Stem-loop ptc-MIR166n

Accession

MI0002231

Description

Populus trichocarpa ptc-MIR166n precursor miRNA

Literature search

6 open access papers mention ptc-MIR166n
(22 sentences)

Sequence

29673351 reads, 427235.0 reads per million, 9 experiments

aagggguguuuggAAUGAAGUUUGAUCCAAGAUCcuugucucucccguuaacuuagucucuguuaccguuagguauucauuacugaguguauuugcagcccccuugucugauuuuagcaucaugagaguaggaagugcuggugaucauaggguuugguucaagauccauuugacucuucucuuuauaucucuccuguguccuagcugguaaucuguaguagucuuaauuaucccuuacuucuuguuaauuuuuagguuugaucuugcaaguaauuauauuuggaaaauaucauaaaaugaucUCGGACCAGGCUUCAUUCCUUacaccuug
..(((((((..(((((((((((((.(((.(((((((((.(((((......(((((((......((((....))))......)))))))......((((.....)))).((((......)))).)))))))))....(((((.((.(((((((...(((..((((...............))))...)))..)))))))))))))).(((((...(((((.......)))))...))))).((((........))))..((((.((.((((((....)))))).))...))))......))))).))).)))))))))))))..))))))).

Structure

aa       uu             A   A     cuugucucucccguuaacuuagucucuguuaccguuagguauucauuacugaguguauuugcagcccccuugucugauuuuagcaucaugagaguaggaagu     u  u       uuu   -uc    uccauu 
  ggggugu  ggAAUGAAGUUUG UCC AGAUC                                                                                                      gcugg ga cauaggg   ggu   aaga      u
  |||||||  ||||||||||||| ||| |||||                                                                                                      ||||| || |||||||   |||   ||||      g
  uuccaca  CCUUACUUCGGAC AGG Ucuag                                                                                                      cgauc cu guguccu   cua   uucu      a
-g       UU             C   C     ---------uaaaauacuauaaaagguuuauauuaaugaacguucuaguuuggauuuuuaauuguucuucauucccuauuaauucugaugaugucuaauggu     -  -       -cu   uau    cuucuc 

Annotation confidence High

Genome context

CM000355.2: 5666163-5666493 [-]

Mature ptc-miR166n-5p

• Accession: MIMAT0055592
• Description: Populus trichocarpa ptc-miR166n-5p mature miRNA
• Sequence: 14 - AAUGAAGUUUGAUCCAAGAUC - 34
• Evidence: experimental ; unknown

Mature ptc-miR166n-3p

• Accession: MIMAT0001937
• Description: Populus trichocarpa ptc-miR166n-3p mature miRNA
• Sequence: 303 - UCGGACCAGGCUUCAUUCCUU - 323
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604