Stem-loop zma-MIR395b

Accession

MI0001796

Description

Zea mays zma-MIR395b precursor miRNA

Literature search

19 open access papers mention zma-MIR395b
(89 sentences)

Sequence

5 reads, 18 reads per million, 2 experiments

gcaacguuuuguguuacuaggaGUUCCCUACAAGCACUUCACAAuaccuuggcucaauaaauuaaaggccaguuGUGAAGUGUUUGGGGGAACUCuugguaucaugaagcauuu
.....((((((((.(((((((((((((((.(((((((((((((((....(((((............))))))))))))))))))))))))))))))))))).))))))))....

Structure

gcaac        u               A               accu     caaua 
     guuuugug uacuaggaGUUCCCU CAAGCACUUCACAAu    uggcu     a
     |||||||| ||||||||||||||| |||||||||||||||    |||||      
     cgaaguac augguuCUCAAGGGG GUUUGUGAAGUGuug    accgg     a
-uuua        u               -               ----     aaauu 

Annotation confidence Not enough data

Genome context

chr2: 6287388-6287501 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from zma-MIR395b

Mature zma-miR395b-5p

• Accession: MIMAT0015164
• Description: Zea mays zma-miR395b-5p mature miRNA
• Sequence: 23 - GUUCCCUACAAGCACUUCACAA - 44
• Evidence: experimental ; Illumina [2]

Mature zma-miR395b-3p

• Accession: MIMAT0001698
• Description: Zea mays zma-miR395b-3p mature miRNA
• Sequence: 75 - GUGAAGUGUUUGGGGGAACUC - 95
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13