Stem-loop zma-MIR156k

Accession

MI0001847

Description

Zea mays zma-MIR156k precursor miRNA

Literature search

54 open access papers mention zma-MIR156k
(344 sentences)

Sequence

8823 reads, 4738.0 reads per million, 111 experiments

ggcuuaggccccgaagagaUUGACAGAAGAGAGCGAGCACcuggcgcggcgaccggcauggaacgcaugccguccccgccGCGUGCUCGCUUCUCUUUCUGUCAGccucucccucguccugag
..((((((...(((((((.(((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))).)))).))))))))).))))...))).))))))

Structure

gg      ccc   ---    a         -    -        c     c  c   c      g 
  cuuagg   cga   agag UUGACAGAA GAGA GCGAGCAC uggcg gg gac ggcaug a
  ||||||   |||   |||| ||||||||| |||| |||||||| ||||| || ||| |||||| a
  gagucc   gcu   ucuc GACUGUCUU CUCU CGCUCGUG Gccgc cc cug ccguac c
--      --u   ccc    c         U    U        C     -  -   -      g 

Annotation confidence High

Genome context

6: 106015334-106015456 [-]

Mature zma-miR156k-5p

• Accession: MIMAT0001749
• Description: Zea mays zma-miR156k-5p mature miRNA
• Sequence: 20 - UUGACAGAAGAGAGCGAGCAC - 40
• Evidence: experimental ; Illumina [2]

Mature zma-miR156k-3p

• Accession: MIMAT0015208
• Description: Zea mays zma-miR156k-3p mature miRNA
• Sequence: 81 - GCGUGCUCGCUUCUCUUUCUGUCAG - 105
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13