Stem-loop zma-MIR156k

Accession

MI0001847

Description

Zea mays zma-MIR156k precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

53 open access papers mention zma-MIR156k
(345 sentences)

Sequence

6608 reads, 9178 reads per million, 119 experiments

ggcuuaggccccgaagagauUGACAGAAGAGAGCGAGCACcuggcgcggcgaccggcauggaacgcaugccguccccgccgcguGCUCGCUUCUCUUUCUGUCAGCcucucccucguccugag
..((((((...(((((((.(((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))).)))).))))))))).))))...))).))))))

Structure

gg      ccc   ---    a         -    -        c     c  c   c      g 
  cuuagg   cga   agag uUGACAGAA GAGA GCGAGCAC uggcg gg gac ggcaug a
  ||||||   |||   |||| ||||||||| |||| |||||||| ||||| || ||| |||||| a
  gagucc   gcu   ucuc GACUGUCUU CUCU CGCUCGug gccgc cc cug ccguac c
--      --u   ccc    C         U    U        c     -  -   -      g 

Annotation confidence Not enough data

Genome context

chr6: 98967260-98967382 [-]

Mature zma-miR156k-5p

• Accession: MIMAT0001749
• Description: Zea mays zma-miR156k-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGCGAGCAC - 40
• Evidence: experimental ; Illumina [2]

Mature zma-miR156k-3p

• Accession: MIMAT0015208
• Description: Zea mays zma-miR156k-3p mature miRNA
• Sequence: 85 - GCUCGCUUCUCUUUCUGUCAGC - 106
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13