Stem-loop sof-MIR408e

Accession

MI0001769

Description

Saccharum officinarum sof-MIR408e precursor miRNA

Literature search

9 open access papers mention sof-MIR408e
(90 sentences)

Sequence

agaagauggguaugguuggagacagggaugaggcagagcaugggaugaggccaucaacaaaauuuccaauuucuguccuccgcuaggccgcuacugcauuuauguuugcuugcucacaaaacggagggauuugugagaguuaucaggcagaaagaacaaagaaggugccucccuggugaaguggugauggccugaccugagacggaugagagcucagcugguguccuguuguugcuuacuuccCUGCACUGACUCUUCCCUGGCuccccaccguugcccuugc
.......(((((((((.((((.((((((.(((.(((.(((.((((.(((((...(((((..((..(((.((.((.((.((((((((((((.((((((.(((((.((((((((((((((((.(.....).))))))))......))))))))...........(((......))).))))))))))).))))))......)).)))).)).))...)).))).))..)))))..)))).).))))))).))).))).)))))).))))..)))).)))))....

Structure

agaagau     -    -u    a      u   g   a   u    u -    cau     aa  uu   a  --u  g  c    -  ------      c      a     -----------------------g        ------        a g 
       gggua uggu  ggag caggga gag cag gca ggga g aggc   caaca  au  cca uu   cu uc uccg cu      aggccg uacugc uuuau                        uuugcuug      cucacaaa c g
       ||||| ||||  |||| |||||| ||| ||| ||| |||| | ||||   |||||  ||  ||| ||   || || |||| ||      |||||| |||||| |||||                        ||||||||      |||||||| | a
       cccgu gcca  ccuC GUCCCU CUC GUC CGU Cccu c uucg   guugu  ug  ggu ga   ga ag aggc ga      uccggu guggug aagug                        agacggac      gaguguuu g g
---cguu     u    cc    G      U   A   A   -    u a    -uu     cc  -u   c  cuc  g  u    a  guccag      a      -     gucccuccguggaagaaacaagaa        uauuga        a g 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR408e

• Accession: MIMAT0001671
• Description: Saccharum officinarum sof-miR408e mature miRNA
• Sequence: 244 - CUGCACUGACUCUUCCCUGGC - 264
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13