Stem-loop zma-MIR156j

Accession

MI0001808

Description

Zea mays zma-MIR156j precursor miRNA

Literature search

52 open access papers mention zma-MIR156j
(343 sentences)

Sequence

892 reads, 1457 reads per million, 10 experiments

cgaguggaccucgggagcgaUGACAGAAGAGAGAGAGCACAacccagcaccagcgaggaaaagccucgcuucugcgagggccgugUGCUCUCUGCUCUCACUGUCAUCgcccacaggccaccgaa
((.((((.(((..((.((((((((((.((((((((((((((.(((.(((..(((((((.....)))))))..)))..)))...)))))))))).))))..))))))))))))..)))))))))..

Structure

--  a    a   cg  a          -A    -          --a   -a   cc       a 
  cg gugg ccu  gg gcgaUGACAG  AGAG AGAGAGCACA   ccc  gca  agcgagg a
  || |||| |||  || ||||||||||  |||| ||||||||||   |||  |||  ||||||| a
  gc cacc gga  cc cgCUACUGUC  UCUC UCUCUCGUgu   ggg  cgu  ucgcucc a
aa  -    -   ca  -          AC    G          gcc   ag   cu       g 

Annotation confidence Not enough data

Genome context

chr7: 134663764-134663888 [-]

Mature zma-miR156j-5p

• Accession: MIMAT0001710
• Description: Zea mays zma-miR156j-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGAGAGCACA - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR156j-3p

• Accession: MIMAT0015175
• Description: Zea mays zma-miR156j-3p mature miRNA
• Sequence: 86 - UGCUCUCUGCUCUCACUGUCAUC - 108
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13