Stem-loop zma-MIR399f

Accession

MI0001807

Description

Zea mays zma-MIR399f precursor miRNA

Literature search

22 open access papers mention zma-MIR399f
(66 sentences)

Sequence

50 reads, 147 reads per million, 2 experiments

caggaugugcaccugcauuucuGGGCAACUUCUCCUUUGGCAGAugcgcgagaaugugccacugcUGCCAAAGGAAAUUUGCCCCGgaauucaucugcacaagca
..(..((((((..((.(((((.((((((.((.(((((((((((..((((......)))).....))))))))))))).)))))).))))).))..))))))..).

Structure

ca ga      cc  c     u      C  C           ---Au    ga 
  g  ugugca  ug auuuc GGGCAA UU UCCUUUGGCAG     gcgc  g
  |  ||||||  || ||||| |||||| || |||||||||||     ||||   
  c  acacgu  ac uaagG CCCGUU AA AGGAAACCGUc     cgug  a
-a ga      cu  u     C      U  -           gucac    ua 

Annotation confidence High

Genome context

chr6: 163860157-163860261 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR399f

Mature zma-miR399f-5p

• Accession: MIMAT0015174
• Description: Zea mays zma-miR399f-5p mature miRNA
• Sequence: 23 - GGGCAACUUCUCCUUUGGCAGA - 44
• Evidence: experimental ; Illumina [2]

Mature zma-miR399f-3p

• Accession: MIMAT0001709
• Description: Zea mays zma-miR399f-3p mature miRNA
• Sequence: 66 - UGCCAAAGGAAAUUUGCCCCG - 86
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13