Stem-loop gma-MIR166b

Accession

MI0001776

Description

Glycine max gma-MIR166b precursor miRNA

Literature search

37 open access papers mention gma-MIR166b
(217 sentences)

Sequence

415558406 reads, 507135.0 reads per million, 178 experiments

gcuugcaaaggugagguugagaGGAAUGUUGUCUGGCUCGAGGucauggaggaggaggaggaguagaguacugagaucagugaaaguuuccaauggaaauuuacccucuuacacaaaaaaaugauucUCGGACCAGGCUUCAUUCCCCccacccaacuuuugcuuuu
....((((((((..(((.(.(.((((((..((((((.((((((((((.......(((((((.((((..(((((....)))))...((((((...)))))))))))))))).)........)))).)))))).))))))..)))))).)).)))..))))))))....

Structure

gcuu        ga   u a a      UU      C      -    -ggaggag -      a    aguacugagaucagugaaa      a 
    gcaaaggu  ggu g g GGAAUG  GUCUGG UCGAGG ucau        g aggagg guag                   guuucc  
    ||||||||  ||| | | ||||||  |||||| |||||| ||||        | |||||| ||||                   |||||| a
    cguuuuca  cca c C CCUUAC  CGGACC GGCUcu agua        c uucucc cauu                   uaaagg  
uuuu        ac   c - C      UU      A      u    aaaaaaca a      -    -------------------      u 

Annotation confidence High

Genome context

chr8: 282785-282951 [-]

Mature gma-miR166b-5p

• Accession: MIMAT0054004
• Description: Glycine max gma-miR166b-5p mature miRNA
• Sequence: 23 - GGAAUGUUGUCUGGCUCGAGG - 43
• Evidence: experimental ; unknown

Mature gma-miR166b-3p

• Accession: MIMAT0001678
• Description: Glycine max gma-miR166b-3p mature miRNA
• Sequence: 128 - UCGGACCAGGCUUCAUUCCCC - 148
• Evidence: experimental ; 454 [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160