Stem-loop zma-MIR159c

Accession

MI0001811

Description

Zea mays zma-MIR159c precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

31 open access papers mention zma-MIR159c
(156 sentences)

Sequence

176 reads, 1799 reads per million, 120 experiments

augauuaagaaaggcgaucgaaGAGCUCCCUUCGAUCCAAUCCaggaggggaaguggucgguugcagcugccgguucauggauaccucucuggugcagcaauggccgcugcucaccucugcacuugcaugggugugcaugacccgggagaugagcccgccaucaucuuucccucgugCUUGGAUUGAAGGGAGCUCCUcucugucugucugucuguc
.......(((.(((((((.((.((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....)).))...))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).))))))))))))))))))...)).))).)))).)))...

Structure

augauua   a    -   c  --a                  UC  g         ----    c    g  g  g    u     g      -cucu       caa  -  c 
       aga aggc gau ga   GAGCUCCCUUCGAUCCAA  Ca gaggggaag    uggu gguu ca cu ccgg ucaug auaccu     ggugcag   ug gc g
       ||| |||| ||| ||   ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   || ||  
       ucu ucug cug cu   CUCGAGGGAAGUUAGGUU  gu cucccuuuc    accg ccga gu ga ggcc aguac uguggg     ucacguc   ac cg c
----cug   g    u   u  cUC                  -C  g         uacu    c    -  a  g    c     g      uacgu       ucc  u  u 

Annotation confidence Not enough data

Genome context

chr3: 2020760-2020976 [-]

Mature zma-miR159c-5p

• Accession: MIMAT0015178
• Description: Zea mays zma-miR159c-5p mature miRNA
• Sequence: 23 - GAGCUCCCUUCGAUCCAAUCC - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR159c-3p

• Accession: MIMAT0001713
• Description: Zea mays zma-miR159c-3p mature miRNA
• Sequence: 178 - CUUGGAUUGAAGGGAGCUCCU - 198
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13