Stem-loop zma-MIR319b

Accession

MI0001815

Description

Zea mays zma-MIR319b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

21 open access papers mention zma-MIR319b
(76 sentences)

Sequence

2110 reads, 13480 reads per million, 120 experiments

gacgacgauggcuggauggaagAGAGCGUCCUUCAGUCCACUCaggggcggugcuagggucgaauuagcugccgacucauucacccacaugccaagcaaacggccauggaaaccagcuuugcagaugagugaaugaagcgggagguaaaagcuucgaucucgcaccgucuuugcUUGGACUGAAGGGUGCUCCCuccucccucgcuccuuguu
...(((((.(((.(((.(((.(.(((((((((((((((((..((((((((((((..(((((((((((.((.(((..((((((((.((..(((.((((.........(((...))))))).)))..)).))))))))..))).)).)))....)))))))).))))))))))))..)))))))))))))))))).))))))...)))..)))))

Structure

gac     -u   --u   u   a A                 CU            ua        ----   g  g   ac        c  ca   c    aaacggcca   a 
   gacga  ggc   gga gga g GAGCGUCCUUCAGUCCA  Caggggcggugc  gggucgaa    uua cu ccg  ucauucac ca  ugc aagc         ugg  
   |||||  |||   ||| ||| | |||||||||||||||||  ||||||||||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||         ||| a
   uuguu  ucg   ccu ccu C CUCGUGGGAAGUCAGGU  guuucugccacg  ucuagcuu    aau ga ggc  aguaagug gu  acg uucg         acc  
---     cc   cuc   -   C -                 Uc            -c        cgaa   g  g   ga        a  ag   u    ---------   a 

Annotation confidence High

Genome context

chr3: 2038966-2039178 [+]

Mature zma-miR319b-5p

• Accession: MIMAT0015182
• Description: Zea mays zma-miR319b-5p mature miRNA
• Sequence: 23 - AGAGCGUCCUUCAGUCCACUC - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR319b-3p

• Accession: MIMAT0001717
• Description: Zea mays zma-miR319b-3p mature miRNA
• Sequence: 175 - UUGGACUGAAGGGUGCUCCC - 194
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13