Stem-loop zma-MIR319c

Accession

MI0001814

Description

Zea mays zma-MIR319c precursor miRNA

Literature search

20 open access papers mention zma-MIR319c
(69 sentences)

Sequence

2137 reads, 1506 reads per million, 29 experiments

gguuuauggcuucuguggaagaGAGCUCUCUUCAGUCCACUCuaaaauggcuguaggguuucauuagcugccgacucauccauucaccugccaagaaccaugggcaagcgguaggucuggucuugguagccgaguggguggcgcgggagcuaaaaucaaacucuacgcuguuuacggUUGGACUGAAGGGUGCUCCCuucaauuugcccaaacacu
.((((..(((....((.((((.((((.((((((((((((.((..(((((((.(((((((((..((((((.(((..((((((((((..(((((((((.(((.((.(........).))))))))))))))..))))))))))..))).))))))....))))))))))))))))..)).)))))))))))).)))).)))).))..))).))))...

Structure

--g    au   uucu  g    a    U            C  ua       u         --ca      g   ac          ac         a   u  g aag 
   guuu  ggc    gu gaag GAGC CUCUUCAGUCCA UC  aaauggc guaggguuu    uuagcu ccg  ucauccauuc  cugccaaga cca gg c   c
   ||||  |||    || |||| |||| |||||||||||| ||  ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| ||| || |    
   caaa  ccg    ua cuuC CUCG GGGAAGUCAGGU gg  uuugucg caucucaaa    aaucga ggc  ggugggugag  gaugguucu ggu cu g   g
uca    -c   --uu  a    C    U            U  ca       -         cuaa      g   gc          cc         -   -  g aug 

Annotation confidence Not enough data

Genome context

chr8: 152709450-152709665 [-]

Mature zma-miR319c-5p

• Accession: MIMAT0015181
• Description: Zea mays zma-miR319c-5p mature miRNA
• Sequence: 23 - GAGCUCUCUUCAGUCCACUC - 42
• Evidence: experimental ; Illumina [2]

Mature zma-miR319c-3p

• Accession: MIMAT0001716
• Description: Zea mays zma-miR319c-3p mature miRNA
• Sequence: 178 - UUGGACUGAAGGGUGCUCCC - 197
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13