Stem-loop ptc-MIR168a

Accession

MI0002243

Description

Populus trichocarpa ptc-MIR168a precursor miRNA

Literature search

6 open access papers mention ptc-MIR168a
(14 sentences)

Sequence

ggucucugauUCGCUUGGUGCAGGUCGGGAAcugauucggcgauuugauugccagauggcucgacaugacugguuguuguggaaaaagaaaaggaaggaaacaggaaaaaaaacaaagaauagcgaauuggauCCCGCCUUGCAUCAACUGAAUcggagg
...((((((((((.((((((((((.(((((.((((((((((.(((((.....))))).))....((((((.....))))))..........................................)))))))).))))).)))))))))).)))))))))).

Structure

ggu          C          U     A        ---------------------------------------------------------------  g     a 
   cucugauUCG UUGGUGCAGG CGGGA cugauucg                                                               gc auuug u
   |||||||||| |||||||||| ||||| ||||||||                                                               || ||||| u
   gaggcUAAGU AACUACGUUC GCCCu gguuaagc                                                               cg uagac g
--g          C          C     a        gauaagaaacaaaaaaaaggacaaaggaaggaaaagaaaaagguguuguuggucaguacagcu  g     c 

Annotation confidence Low

Genome context

CM000339.2: 4412270-4412429 [-]

Mature ptc-miR168a-5p

• Accession: MIMAT0001949
• Description: Populus trichocarpa ptc-miR168a-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAA - 31
• Evidence: experimental ; cloned [1], miRNAseq [4]

Mature ptc-miR168a-3p

• Accession: MIMAT0022896
• Description: Populus trichocarpa ptc-miR168a-3p mature miRNA
• Sequence: 134 - CCCGCCUUGCAUCAACUGAAU - 154
• Evidence: experimental ; miRNAseq [4]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


4. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034