Stem-loop zma-MIR169d

Accession

MI0001833

Description

Zea mays zma-MIR169d precursor miRNA

Literature search

31 open access papers mention zma-MIR169d
(231 sentences)

Sequence

301 reads, 444 reads per million, 4 experiments

gcaauaggggccacucaggcUAGCCAAGGAGACUGCCUAUGaaccucucaaugguccacacauucagguccuuuguaaacaaaggacauaggcaagucauccuuggcuaucagagguaggcccuuauu
..((((((((((.(((.((.(((((((((((((((((((((.((((...((((.......)))).))))((((((....)))))).))))))).)))).)))))))))))).)))...))))))))))

Structure

gc          --a   a  c          -    -       ----------------a    cuc    gu 
  aauaggggcc   cuc gg UAGCCAAGGA GACU GCCUAUG                 accu   aaug  c
  ||||||||||   ||| || |||||||||| |||| |||||||                 ||||   ||||  c
  uuauucccgg   gag cu aucgguuccu cuga cggauac                 ugga   uuac  a
--          aug   a  -          a    a       aggaaacaaauguuucc    --c    ac 

Annotation confidence Not enough data

Genome context

chr4: 49565639-49565766 [-]

Mature zma-miR169d

• Accession: MIMAT0001735
• Description: Zea mays zma-miR169d mature miRNA
• Sequence: 21 - UAGCCAAGGAGACUGCCUAUG - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13