Stem-loop sbi-MIR169d

Accession

MI0001558

Description

Sorghum bicolor sbi-MIR169d precursor miRNA

Literature search

4 open access papers mention sbi-MIR169d
(28 sentences)

Sequence

gaagaagaggggccuugcaugguggcgagagccugccuuuggUAGCCAAGGAUGACUUGCCUacauggcauugcgaguuccgguugcauggccaguucagcugaguuuguGGGCGGUCACCUUGGCUAGCcugaguggcucuugccugucauggaaggccucuucuucuguc
..((((((((((((((.(((((.((((((((((...(((.(((((((((((.(((((.(((((((((((..(((((.......)))))..)))).............)))))))))))))))))))).))).))).))))))))))..))))).)))))).))))))))...

Structure

-ga        -      g     -u          ugc   u   -        A     U       -------------    au     gu 
   agaagagg ggccuu caugg  ggcgagagcc   cuu ggU AGCCAAGG UGACU GCCUaca             uggc  ugcga  u
   |||||||| |||||| |||||  ||||||||||   ||| ||| |||||||| ||||| |||||||             ||||  |||||  c
   ucuucuuc ccggaa guacu  ccguucucgg   gag cCG UCGGUUCC ACUGG CGGGugu             accg  acguu  c
cug        u      g     gu          --u   u   A        -     -       uugagucgacuug    gu     gg 

Annotation confidence Not enough data

Genome context

chr6: 39811386-39811557 [+]

Mature sbi-miR169d-5p

• Accession: MIMAT0001454
• Description: Sorghum bicolor sbi-miR169d-5p mature miRNA
• Sequence: 43 - UAGCCAAGGAUGACUUGCCU - 62
• Evidence: not_experimental

Mature sbi-miR169d-3p

• Accession: MIMAT0026431
• Description: Sorghum bicolor sbi-miR169d-3p mature miRNA
• Sequence: 111 - GGGCGGUCACCUUGGCUAGC - 130
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290