Stem-loop zma-MIR171n

Accession

MI0013208

Description

Zea mays zma-MIR171n precursor miRNA

Literature search

20 open access papers mention zma-MIR171n
(57 sentences)

Sequence

16 reads, 120 reads per million, 3 experiments

aUAUUGGUGAGGUUCAAUCCGAuguuagguuuuacaaaagcuguaaaaucaguaucUGAUUGAGCCGCGCCAAUAUCu
(((((((((.(((((((((.((((((.(((((((((.....))))))))))))))).))))))))).)))))))))..

Structure

--         A         C      a         a 
  aUAUUGGUG GGUUCAAUC GAuguu gguuuuaca a
  ||||||||| ||||||||| |||||| ||||||||| a
  UAUAACCGC CCGAGUUAG cuauga cuaaaaugu g
uC         G         U      -         c 

Annotation confidence Not enough data

Genome context

chr9: 100082921-100082998 [-]

Mature zma-miR171n-5p

• Accession: MIMAT0015332
• Description: Zea mays zma-miR171n-5p mature miRNA
• Sequence: 2 - UAUUGGUGAGGUUCAAUCCGA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR171n-3p

• Accession: MIMAT0013997
• Description: Zea mays zma-miR171n-3p mature miRNA
• Sequence: 57 - UGAUUGAGCCGCGCCAAUAUC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716