Stem-loop zma-MIR393c

Accession

MI0013211

Description

Zea mays zma-MIR393c precursor miRNA

Literature search

22 open access papers mention zma-MIR393c
(72 sentences)

Sequence

414 reads, 1740.0 reads per million, 27 experiments

cUCCAAAGGGAUCGCAUUGAUCuaaccugccgaucgacgccgacguacguacgugcccgaggacaagcagaucagucAGUGCAAUCCCUUUGGAAUU
.(((((((((((.(((((((.((...((((...((..((...((((....))))...))..))...))))...))))))))).)))))))))))...

Structure

--c           C       U  aac    cga  ga  ccg    a 
   UCCAAAGGGAU GCAUUGA Cu   cugc   uc  cg   acgu c
   ||||||||||| ||||||| ||   ||||   ||  ||   ||||  
   AGGUUUCCCUA CGUGAcu ga   gacg   ag  gc   ugca g
UUA           A       -  cua    aac  ga  ccg    u 

Annotation confidence High

Genome context

10: 150904915-150905011 [-]

Mature zma-miR393c-5p

• Accession: MIMAT0014000
• Description: Zea mays zma-miR393c-5p mature miRNA
• Sequence: 2 - UCCAAAGGGAUCGCAUUGAUC - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR393c-3p

• Accession: MIMAT0015335
• Description: Zea mays zma-miR393c-3p mature miRNA
• Sequence: 78 - AGUGCAAUCCCUUUGGAAUU - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716