Stem-loop zma-MIR159e

Accession

MI0013185

Description

Zea mays zma-MIR159e precursor miRNA

Literature search

31 open access papers mention zma-MIR159e
(156 sentences)

Sequence

16 reads, 3823 reads per million, 11 experiments

gCAGCUCCUGCAGCAUCUGUUCgaggcucgccgcguucugaugauccggcagcgcaaguccggcggcgacggcggcggccgaggucggcggcgccggcuggccguAUUGGUUUGAAGGGAGCUCCAc
(.(((((((.(((.(((.((....((((.((((.((.(((.(((((((((.((((..((((....).))).)).)).)))).))))).))).)))))).))))..)).))))))..))))))).)..

Structure

-- C       -G   C   U  UCga    c    c  u   a     -    a  -  aa   - g 
  g AGCUCCU  CAG AUC GU    ggcu gccg gu cug ugauc cggc gc gc  guc c g
  | |||||||  ||| ||| ||    |||| |||| || ||| ||||| |||| || ||  ||| |  
  C UCGAGGG  GUU UGG UA    ccgg cggc cg ggc gcugg gccg cg cg  cag g c
cA C       AA   -   U  --ug    u    -  c   g     a    g  g  -g   c g 

Annotation confidence Not enough data

Genome context

chr1: 249664337-249664463 [-]

Mature zma-miR159e-5p

• Accession: MIMAT0015309
• Description: Zea mays zma-miR159e-5p mature miRNA
• Sequence: 2 - CAGCUCCUGCAGCAUCUGUUC - 22
• Evidence: not_experimental

Mature zma-miR159e-3p

• Accession: MIMAT0013974
• Description: Zea mays zma-miR159e-3p mature miRNA
• Sequence: 106 - AUUGGUUUGAAGGGAGCUCCA - 126
• Evidence: not_experimental

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716