Stem-loop zma-MIR156c

Accession

MI0001460

Description

Zea mays zma-MIR156c precursor miRNA

Literature search

53 open access papers mention zma-MIR156c
(339 sentences)

Sequence

130839 reads, 10912.0 reads per million, 110 experiments

gguggaggagaggugaaagcUGACAGAAGAGAGUGAGCACacauggugccuuucuugcaugauguaugaucgagagaguucaugcucgaagcuaugcgugcucacuucucucuuugucagccauuagaacuccucuauc
((((((((((...(((..((((((((((((((((((((((.((((((....(((..((((((.................))))))..))))))))).)))))))).))))).)))))))))..)))...))))))))))

Structure

          agg   aa         -     -        a      gccu   uu      uguauga 
gguggaggag   uga  gcUGACAGA AGAGA GUGAGCAC cauggu    uuc  gcauga       u
||||||||||   |||  ||||||||| ||||| |||||||| ||||||    |||  ||||||       c
cuaucuccuc   auu  cgacuguuu ucucu cacucgug guaucg    aag  cguacu       g
          aag   ac         c     u        c      ----   cu      ugagaga 

Annotation confidence Not enough data

Genome context

3: 7690484-7690622 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR156c

Mature zma-miR156c-5p

• Accession: MIMAT0001355
• Description: Zea mays zma-miR156c-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: experimental ; Illumina [3]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


3. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360