Stem-loop zma-MIR156f

Accession

MI0001457

Description

Zea mays zma-MIR156f precursor miRNA

Literature search

51 open access papers mention zma-MIR156f
(339 sentences)

Sequence

127017 reads, 135637 reads per million, 131 experiments

uggcugcuagaugguguggcUGACAGAAGAGAGUGAGCACgcaucggccagacugcaucuauauacggcugccccaaagcgacggaucgauggaugccuagccuaggccuaggcgcagcugcuguugcguGCUCACUUCUCUUUCUGUCAGCucucucucucauccu
.((.((..(((.((...((((((((((((((((((((((((((.((((.((.((((((((((...((..(((......))).)).....))))))(((((((....).)))))))))))))))).))))))))))).)))).))))))))))))).)))..)).)).

Structure

u  c  cu   u  ugu           -    -           u    c  a    -------------------      --aua  gc   cc 
 gg ug  aga gg   ggcUGACAGAA GAGA GUGAGCACgca cggc ag cugc                   aucuau     cg  ugc  c
 || ||  ||| ||   ||||||||||| |||| ||||||||||| |||| || ||||                   ||||||     ||  |||   
 cc ac  ucu uc   uCGACUGUCUU CUCU CACUCGugcgu gucg uc gacg                   uaggua     gc  gcg  a
u  u  uc   c  ---           U    U           u    -  -    cggauccggauccgauccg      gcuag  -a   aa 

Annotation confidence High

Genome context

chr2: 185613978-185614144 [-]

Mature zma-miR156f-5p

• Accession: MIMAT0001352
• Description: Zea mays zma-miR156f-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: experimental ; Illumina [2]

Mature zma-miR156f-3p

• Accession: MIMAT0015125
• Description: Zea mays zma-miR156f-3p mature miRNA
• Sequence: 131 - GCUCACUUCUCUUUCUGUCAGC - 152
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716