Stem-loop zma-MIR167d

Accession

MI0001477

Description

Zea mays zma-MIR167d precursor miRNA

Literature search

29 open access papers mention zma-MIR167d
(128 sentences)

Sequence

22674 reads, 10105 reads per million, 15 experiments

ugcccaagggaacgagUGAAGCUGCCAGCAUGAUCUAgcucugagugaucacccgaaaaagaacaauaguucuagguggucaugccuugcuaGGUCAUGCUGCUGCAGCCUCACUucuucccgucguugggca
((((((((((((.((((((.(((((((((((((((((((.....(((((((((......(((((....))))).))))))))).....))))))))))))))..))))).)))))).)))))....)))))))

Structure

       ----     c      A     --              ucuga         cgaaaa     a 
ugcccaa    gggaa gagUGA GCUGC  CAGCAUGAUCUAgc     gugaucacc      agaac a
|||||||    ||||| |||||| |||||  ||||||||||||||     |||||||||      |||||  
acggguu    cccuu uUCACU CGACG  GUCGUACUGGaucg     uacuggugg      ucuug u
       gcug     c      C     UC              uuccg         -----a     a 

Annotation confidence Low

Genome context

chr1: 292918639-292918771 [-]

Mature zma-miR167d-5p

• Accession: MIMAT0001372
• Description: Zea mays zma-miR167d-5p mature miRNA
• Sequence: 17 - UGAAGCUGCCAGCAUGAUCUA - 37
• Evidence: experimental ; Illumina [2]

Mature zma-miR167d-3p

• Accession: MIMAT0015144
• Description: Zea mays zma-miR167d-3p mature miRNA
• Sequence: 93 - GGUCAUGCUGCUGCAGCCUCACU - 115
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716