Stem-loop zma-MIR156h

Accession

MI0001463

Description

Zea mays zma-MIR156h precursor miRNA

Literature search

51 open access papers mention zma-MIR156h
(340 sentences)

Sequence

126458 reads, 3245 reads per million, 126 experiments

cgggcucgcgcgcgcgcggUGACAGAAGAGAGUGAGCACacggccgggcgugacggcacgugccgucgcggccgcguGCUCACUGCUCUUUCUGUCAUCcgcugguccgggccuc
.(((((((.((..(((.((((((((((((((((((((((.(((((....((((((((....))))))))))))).))))))))).))).)))))))))))))..)).))))))).

Structure

c       c  gc   c          -   -         a     gggc        a 
 gggcucg gc  gcg ggUGACAGAA GAG AGUGAGCAC cggcc    gugacggc c
 ||||||| ||  ||| |||||||||| ||| ||||||||| |||||    ||||||||  
 uccgggc ug  cgc CUACUGUCUU CUC UCACUCGug gccgg    cgcugccg g
c       c  gu   -          U   G         c     ----        u 

Annotation confidence Not enough data

Genome context

chr10: 129642870-129642984 [-]

Mature zma-miR156h-5p

• Accession: MIMAT0001358
• Description: Zea mays zma-miR156h-5p mature miRNA
• Sequence: 20 - UGACAGAAGAGAGUGAGCAC - 39
• Evidence: experimental ; Illumina [2]

Mature zma-miR156h-3p

• Accession: MIMAT0015130
• Description: Zea mays zma-miR156h-3p mature miRNA
• Sequence: 78 - GCUCACUGCUCUUUCUGUCAUC - 99
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716