Stem-loop sbi-MIR172f

Accession

MI0013256

Description

Sorghum bicolor sbi-MIR172f precursor miRNA

Literature search

4 open access papers mention sbi-MIR172f
(30 sentences)

Sequence

3971 reads, 138.0 reads per million, 22 experiments

GCGGCAUCAUCAGGAUUCACaccggguaaacaccguugggugggugcaguuacccaugcacauauaugcaggucuggcucuaucuguugcuugcgugAGAAUCCUGAUGAUGCUGCAC
((((((((((((((((((.(((((((((..((((....)))).(((((........)))))......((((((........)))))))))))).))).))))))))))))))))))..

Structure

--                  A   -      aacaccguugggugggugcaguuacccaugcacauauau      cug 
  GCGGCAUCAUCAGGAUUC Cac cgggua                                       gcaggu   g
  |||||||||||||||||| ||| ||||||                                       ||||||    
  CGUCGUAGUAGUCCUAAG gug guucgu                                       ugucua   c
CA                  A   c      ---------------------------------------      ucu 

Annotation confidence High

Genome context

chr5: 19295951-19296068 [-]

Mature sbi-miR172f-5p

• Accession: MIMAT0056450
• Description: Sorghum bicolor sbi-miR172f-5p mature miRNA
• Sequence: 1 - GCGGCAUCAUCAGGAUUCAC - 20
• Evidence: experimental ; unknown

Mature sbi-miR172f-3p

• Accession: MIMAT0014045
• Description: Sorghum bicolor sbi-miR172f-3p mature miRNA
• Sequence: 98 - AGAAUCCUGAUGAUGCUGCAC - 118
• Evidence: not_experimental

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716