Stem-loop zma-MIR164c

Accession

MI0001472

Description

Zea mays zma-MIR164c precursor miRNA

Literature search

29 open access papers mention zma-MIR164c
(200 sentences)

Sequence

10012 reads, 9339.0 reads per million, 113 experiments

uggcgaggugcgcGCGGUGGAGAAGCAGGGCACGUGCAuucuuuccgucgccggccggcuuggcagcggccggcggcccggcucucgcagucacgcguacgucgccugagcggcgcgcgcgagagagagagacacggcaggucguCGCCGGCGCGGCUAACUGGugcaggugcagcagcuagcuucugaaacccagccagccagccagccggccggccggccgaucgaugcgugcaugugcccuucuucuccaucgggcacgccucgccu
.(((((((((.((.(((((((((((.(((((((((((((.(..((.((((((((((((((.(((.(((.(((((((((((..((((.(..((.(((((.((((((....)))))).))))).))..).))))..)))......)))))))))))((((..(((((...(((.(((.((....)).)))..)))..)))))..)))).))))))))))))).)))).)).).))))))))))))).))))))))))).)).))))))))).

Structure

u         c  G           C             u uu  c    -          u   agcggccggcggcccggcucucgcagucacgcguacgucgccugagcggcgcgcgcgagagagagagacacggcaggucguCGCCGGCGC    AA     gca   -g   c  c 
 ggcgaggug gc CGGUGGAGAAG AGGGCACGUGCAu c  uc gucg ccggccggcu ggc                                                                                          GGCU  CUGGu   ggu  cag ag u
 ||||||||| || ||||||||||| ||||||||||||| |  || |||| |||||||||| |||                                                                                          ||||  |||||   |||  ||| ||  
 ccgcuccgc cg gcuaccucuuc ucccguguacgug g  ag uagc ggccggccgg ccg                                                                                          ccga  gaccg   cca  guc uc a
u         a  g           u             c -u  c    c          -   -----------------------------------------------------------------------------------------a    cc     -ac   aa   u  g 

Annotation confidence Low

Genome context

6: 164493875-164494144 [+]

Mature zma-miR164c-5p

• Accession: MIMAT0001367
• Description: Zea mays zma-miR164c-5p mature miRNA
• Sequence: 14 - GCGGUGGAGAAGCAGGGCACGUGCA - 38
• Evidence: experimental ; Illumina [2]

Mature zma-miR164c-3p

• Accession: MIMAT0015139
• Description: Zea mays zma-miR164c-3p mature miRNA
• Sequence: 146 - CGCCGGCGCGGCUAACUGG - 164
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716