Stem-loop sbi-MIR398

Accession

MI0013257

Description

Sorghum bicolor sbi-MIR398 precursor miRNA

Literature search

7 open access papers mention sbi-MIR398
(23 sentences)

Sequence

11694 reads, 652.0 reads per million, 50 experiments

gGGGGCGGACUGGGAACACAUGggaaugagagaugagauugcucggucgugcuggcccugggcucguaguugaucugcuuguaugcaUGUGUUCUCAGGUCGCCCCCGc
(((((((..(((((((((((((.(.(((((((((.((...((((((((.....))))..))))......)).)))).))))).).)))))))))))))..)))))))..

Structure

--       GA             g a     -    g  ---auu    --    g 
  gGGGGCG  CUGGGAACACAUG g augag agau ag      gcuc  gguc u
  |||||||  ||||||||||||| | ||||| |||| ||      ||||  |||| g
  CCCCCGC  GACUCUUGUGUac u uguuc ucua uu      cggg  ccgg c
cG       UG             g a     g    g  gaugcu    uc    u 

Annotation confidence High

Genome context

chr2: 15132480-15132588 [-]

Mature sbi-miR398-5p

• Accession: MIMAT0056451
• Description: Sorghum bicolor sbi-miR398-5p mature miRNA
• Sequence: 2 - GGGGCGGACUGGGAACACAUG - 22
• Evidence: experimental ; unknown

Mature sbi-miR398-3p

• Accession: MIMAT0014046
• Description: Sorghum bicolor sbi-miR398-3p mature miRNA
• Sequence: 88 - UGUGUUCUCAGGUCGCCCCCG - 108
• Evidence: not_experimental

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716