Stem-loop zma-MIR167b

Accession

MI0001476

Description

Zea mays zma-MIR167b precursor miRNA

Literature search

29 open access papers mention zma-MIR167b
(132 sentences)

Sequence

22654 reads, 13452 reads per million, 11 experiments

agugcccaagauaaagggUGAAGCUGCCAGCAUGAUCUAacgacggcauugcucugcugcugcagugaggcuugcgagugaugguuaGAUCAUGCUGUGACAGUUUCACUcuuucccuuugggcaca
.(((((((((..(((((((((((((((((((((((((((((.....((((((((.((.(((.......)))..)))))))))))))))))))))))).).))))))))))))))..).)))))))).

Structure

a        - au              - -              gacgg        u  -u   gc 
 gugcccaa g  aaagggUGAAGCUG C CAGCAUGAUCUAac     cauugcuc gc  gcu  a
 |||||||| |  |||||||||||||| | ||||||||||||||     |||||||| ||  |||  g
 cacggguu c  uuucUCACUUUGAC G GUCGUACUAGauug     guagugag cg  cgg  u
a        u cc              A U              -----        -  uu   ag 

Annotation confidence Not enough data

Genome context

chr5: 7976369-7976495 [+]

Mature zma-miR167b-5p

• Accession: MIMAT0001371
• Description: Zea mays zma-miR167b-5p mature miRNA
• Sequence: 19 - UGAAGCUGCCAGCAUGAUCUA - 39
• Evidence: experimental ; Illumina [2]

Mature zma-miR167b-3p

• Accession: MIMAT0015143
• Description: Zea mays zma-miR167b-3p mature miRNA
• Sequence: 88 - GAUCAUGCUGUGACAGUUUCACU - 110
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716