Stem-loop zma-MIR408b

Accession

MI0013237

Description

Zea mays zma-MIR408b precursor miRNA

Literature search

22 open access papers mention zma-MIR408b
(138 sentences)

Sequence

160 reads, 1149 reads per million, 7 experiments

gaCAGGGACGAGGCAGAGCAUGGguagggggccaucaacagaauuccaaauuugauuucuguuugcucgcucacaaaauggagggacucaccacaaacacacucaggcguuguugcucccucccCUGCACUGCCUCUUCCCUGGCuc
..((((((.(((((((.(((.(((.(((((((....(((((((.((.......)).)))))))...((.(((........))).)).........((((.((......)))))))))))))))).))).))))))).))))))....

Structure

--ga      C       A   U   u       -----------------------------------------------cauc       u  ca 
    CAGGGA GAGGCAG GCA GGg agggggc                                                   aacagaa uc  a
    |||||| ||||||| ||| ||| |||||||                                                   ||||||| ||  a
    GUCCCU CUCCGUC CGU ccc ucccucg                                                   uugucuu ag  u
cuCG      U       A   C   -       uuguugcggacucacacaaacaccacucagggagguaaaacacucgcucgu       u  uu 

Annotation confidence Not enough data

Genome context

chr8: 39583938-39584084 [-]

Mature zma-miR408b-5p

• Accession: MIMAT0015360
• Description: Zea mays zma-miR408b-5p mature miRNA
• Sequence: 3 - CAGGGACGAGGCAGAGCAUGG - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR408b-3p

• Accession: MIMAT0014026
• Description: Zea mays zma-miR408b-3p mature miRNA
• Sequence: 125 - CUGCACUGCCUCUUCCCUGGC - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716