Stem-loop zma-MIR156b

Accession

MI0001459

Description

Zea mays zma-MIR156b precursor miRNA

Literature search

55 open access papers mention zma-MIR156b
(344 sentences)

Sequence

201224 reads, 12555.0 reads per million, 113 experiments

agaugaguuuuuugaaGGUUUGACAGAAGAGAGUGAGCACacacggugguuucuuaccaugagugucaugcuaggagcuguGCGUGCUCACCCUCUAUCUGUCAGUcacucaucaagcccaucu
(((((.((((..(((..(.((((((((((((.((((((((.((((((....(((((.(((((...))))).))))))))))).)))))))).)))).)))))))).)..)))..)))).)))))

Structure

     a    uu   aG U        -    A        a      gguu     c     g 
agaug guuu  uga  G UUGACAGA AGAG GUGAGCAC cacggu    ucuua cauga  
||||| ||||  |||  | |||||||| |||| |||||||| ||||||    ||||| ||||| u
ucuac cgaa  acu  c GACUGUCU UCUC CACUCGUG Gugucg    aggau guacu  
     c    cu   ca U        A    C        C      ----     c     g 

Annotation confidence Medium

Genome context

3: 7690198-7690321 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR156b

Mature zma-miR156b-5p

• Accession: MIMAT0001354
• Description: Zea mays zma-miR156b-5p mature miRNA
• Sequence: 17 - GGUUUGACAGAAGAGAGUGAGCAC - 40
• Evidence: experimental ; Illumina [3]

Mature zma-miR156b-3p

• Accession: MIMAT0015127
• Description: Zea mays zma-miR156b-3p mature miRNA
• Sequence: 82 - GCGUGCUCACCCUCUAUCUGUCAGU - 106
• Evidence: experimental ; Illumina [3]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


3. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360