Stem-loop zma-MIR166n

Accession

MI0013197

Description

Zea mays zma-MIR166n precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

32 open access papers mention zma-MIR166n
(210 sentences)

Sequence

19240 reads, 66413 reads per million, 4 experiments

gGGAUUGUUGUCUGGCUCGGUGucuccggucgagayggccuugccggcgccggagcugucgucgaccggagaucUCGGACCAGGCUUCAAUCCCUu
(((((((..((((((.((((.((((((((((((((.(((((.((....)).)).))).)).)))))))))))).)))).))))))..)))))))..

Structure

--       UU      C    U            -  y   -  u  c 
  gGGAUUG  GUCUGG UCGG Gucuccggucga ga ggc cu gc g
  |||||||  |||||| |||| |||||||||||| || ||| || ||  
  CCCUAAC  CGGACC GGCU uagaggccagcu cu ucg gg cg g
uU       UU      A    c            g  g   a  c  c 

Annotation confidence High

Genome context

chr4: 181112182-181112277 [+]

Mature zma-miR166n-5p

• Accession: MIMAT0015321
• Description: Zea mays zma-miR166n-5p mature miRNA
• Sequence: 2 - GGAUUGUUGUCUGGCUCGGUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR166n-3p

• Accession: MIMAT0013986
• Description: Zea mays zma-miR166n-3p mature miRNA
• Sequence: 75 - UCGGACCAGGCUUCAAUCCCU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716