Stem-loop sbi-MIR528

Accession

MI0013259

Description

Sorghum bicolor sbi-MIR528 precursor miRNA MIR528

Gene
family

RF04083; MIR528

Literature search

5 open access papers mention sbi-MIR528
(26 sentences)

Sequence

427635 reads, 4973.0 reads per million, 50 experiments

UGGAAGGGGCAUGCAGAGGAGcacgaggcuuggcuggaagccgaccuacgccucgcuggcucuCCUGUGCCUGCCUCUUCCAUU
(((((((((((.(((.(((((((((((((((((((...)))))).....)))))).))...))))).))).)))))))))))..

Structure

--           U   G     ---  -      -----      g 
  UGGAAGGGGCA GCA AGGAG   ca cgaggc     uuggcu  
  ||||||||||| ||| |||||   || ||||||     |||||| g
  ACCUUCUCCGU CGU UCCuc   gu gcuccg     agccga  
UU           C   G     ucg  c      caucc      a 

Annotation confidence High

Genome context

chr1: 78558547-78558630 [-]

Mature sbi-miR528-5p

• Accession: MIMAT0014048
• Description: Sorghum bicolor sbi-miR528-5p mature miRNA
• Sequence: 1 - UGGAAGGGGCAUGCAGAGGAG - 21
• Evidence: not_experimental

Mature sbi-miR528-3p

• Accession: MIMAT0056452
• Description: Sorghum bicolor sbi-miR528-3p mature miRNA
• Sequence: 64 - CCUGUGCCUGCCUCUUCCAUU - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716