Stem-loop zma-MIR393b

Accession

MI0013210

Description

Zea mays zma-MIR393b precursor miRNA

Literature search

21 open access papers mention zma-MIR393b
(74 sentences)

Sequence

162 reads, 640.0 reads per million, 41 experiments

gUCCAAAGGGAUCGCAUUGAUCcaucauuccuuccauuuuuucaugcauggcuggucuucgucgucugcaaggacuugucgaUGGAUCAAUGCGAUCCUUUUGGAGGc
.(((((((((((((((((((((((((........(((......)))...(((.((((((.((.....)).)))))).))))))))))))))))))))))))))))...

Structure

--g                         auuccuuccauuuuuucaugcau   u      c  c 
   UCCAAAGGGAUCGCAUUGAUCcauc                       ggc ggucuu gu g
   |||||||||||||||||||||||||                       ||| |||||| || u
   AGGUUUUCCUAGCGUAACUAGGUag                       cug ucagga cg c
cGG                         -----------------------   u      a  u 

Annotation confidence High

Genome context

3: 18649433-18649540 [+]

Mature zma-miR393b-5p

• Accession: MIMAT0013999
• Description: Zea mays zma-miR393b-5p mature miRNA
• Sequence: 2 - UCCAAAGGGAUCGCAUUGAUC - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR393b-3p

• Accession: MIMAT0015334
• Description: Zea mays zma-miR393b-3p mature miRNA
• Sequence: 83 - UGGAUCAAUGCGAUCCUUUUGGAGG - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716