Stem-loop zma-MIR167c

Accession

MI0001478

Description

Zea mays zma-MIR167c precursor miRNA

Literature search

29 open access papers mention zma-MIR167c
(126 sentences)

Sequence

22730 reads, 10140 reads per million, 15 experiments

ugcccaagggaacgagUGAAGCUGCCAGCAUGAUCUAgcucggagugaucacgcgaggagaacaauagcucgagguggucaugccuugcuaGAUCAUGCUGUGGCAGCCUCACUucuucccguccuugggca
((((((((((((.((((((.(((((((((((((((((((..((.((((((((.((((...........))))..)))))))).))..))))))))))))..))))))).)))))).)))))....)))))))

Structure

       ----     c      A       --            uc  a        -g    gaga 
ugcccaa    gggaa gagUGA GCUGCCA  GCAUGAUCUAgc  gg gugaucac  cgag    a
|||||||    ||||| |||||| |||||||  ||||||||||||  || ||||||||  ||||    c
acggguu    cccuu uUCACU CGACGGU  CGUACUAGaucg  cc uacuggug  gcuc    a
       ccug     c      C       GU            uu  g        ga    gaua 

Annotation confidence Medium

Genome context

chr5: 4414244-4414375 [+]

Mature zma-miR167c-5p

• Accession: MIMAT0001373
• Description: Zea mays zma-miR167c-5p mature miRNA
• Sequence: 17 - UGAAGCUGCCAGCAUGAUCUA - 37
• Evidence: experimental ; Illumina [2]

Mature zma-miR167c-3p

• Accession: MIMAT0015145
• Description: Zea mays zma-miR167c-3p mature miRNA
• Sequence: 92 - GAUCAUGCUGUGGCAGCCUCACU - 114
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716