Stem-loop zma-MIR164a

Accession

MI0001469

Description

Zea mays zma-MIR164a precursor miRNA

Literature search

31 open access papers mention zma-MIR164a
(232 sentences)

Sequence

1587 reads, 2941 reads per million, 3 experiments

cagugacaaggaccacgcUGGAGAAGCAGGGCACGUGCAugcgcauaccauauagcuagacgauguucucucucgcuccgcucgaccaagcuucauguauggauggguacgcacgCACGUGUUCUCCUUCUCCAUCgaggucuuucucacuu
.(((((.(((((((.((.((((((((.(((((((((((.(((((((.(((((((((.(((.((.....))))).)))..(((......))).....)))))))))....)))).))))))))))).)))))))).)).))))))).))))).

Structure

c     c       a  c        C           A    ----   a      -------------------   u   c  u 
 aguga aaggacc cg UGGAGAAG AGGGCACGUGC ugcg    cau ccauau                   agc aga ga g
 ||||| ||||||| || |||||||| ||||||||||| ||||    ||| ||||||                   ||| ||| || u
 ucacu uuucugg gC ACCUCUUC UCUUGUGCACg acgc    gua gguaug                   ucg ucu cu u
u     c       a  U        C           c    augg   -      uacuucgaaccagcucgcc   c   -  c 

Annotation confidence Not enough data

Genome context

chr2: 223401157-223401308 [-]

Mature zma-miR164a-5p

• Accession: MIMAT0001364
• Description: Zea mays zma-miR164a-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCA - 39
• Evidence: experimental ; Illumina [2]

Mature zma-miR164a-3p

• Accession: MIMAT0015136
• Description: Zea mays zma-miR164a-3p mature miRNA
• Sequence: 116 - CACGUGUUCUCCUUCUCCAUC - 136
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716