Stem-loop zma-MIR166i

Accession

MI0001485

Description

Zea mays zma-MIR166i precursor miRNA

Literature search

32 open access papers mention zma-MIR166i
(194 sentences)

Sequence

116060 reads, 353816 reads per million, 10 experiments

ggGGAAUGUCGUCUGGCGCGAGAccguaccagacgacgugcucucucggucgucggacggucUCGGACCAGGCUUCAUUCCCc
((((((((..((((((..(((((((((.((.((((((...........)))))))))))))))))..))))))..))))))))

Structure

        UC      CG         a  a      gugc 
ggGGAAUG  GUCUGG  CGAGAccgu cc gacgac    u
||||||||  ||||||  ||||||||| || ||||||    c
cCCCUUAC  CGGACC  GCUcuggca gg cugcug    u
        UU      AG         -  -      gcuc 

Annotation confidence High

Genome context

chr1: 244940015-244940097 [+]

Mature zma-miR166i-5p

• Accession: MIMAT0015149
• Description: Zea mays zma-miR166i-5p mature miRNA
• Sequence: 3 - GGAAUGUCGUCUGGCGCGAGA - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR166i-3p

• Accession: MIMAT0001379
• Description: Zea mays zma-miR166i-3p mature miRNA
• Sequence: 63 - UCGGACCAGGCUUCAUUCCC - 82
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716