Stem-loop zma-MIR169q

Accession

MI0013204

Description

Zea mays zma-MIR169q precursor miRNA

Literature search

31 open access papers mention zma-MIR169q
(217 sentences)

Sequence

6 reads, 40 reads per million, 3 experiments

uUAGCCAAGAAUGGCUUGCCUAucuccauuauuugguccaucuucuugggagaccucccucaugguguggauggaauguggaugguGGCAGGCCUUCUGGCUAAGu
(((((((.(((.((((((((.((((((((.((((.((((((((....((((....))))....)).)))))).))))))))).)))))))))))))))))))))..

Structure

--       A   U        U   -     u    g      -  ucuu    g 
  uUAGCCA GAA GGCUUGCC Auc uccau auuu guccau cu    ggga a
  ||||||| ||| |||||||| ||| ||||| |||| |||||| ||    ||||  
  AAUCGGU CUU CCGGACGG ugg aggug uaag uaggug gg    cccu c
uG       -   -        -   u     -    g      u  uacu    c 

Annotation confidence Not enough data

Genome context

chr8: 130375286-130375391 [+]

Mature zma-miR169q-5p

• Accession: MIMAT0013993
• Description: Zea mays zma-miR169q-5p mature miRNA
• Sequence: 2 - UAGCCAAGAAUGGCUUGCCUA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR169q-3p

• Accession: MIMAT0015328
• Description: Zea mays zma-miR169q-3p mature miRNA
• Sequence: 87 - GGCAGGCCUUCUGGCUAAG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716