Stem-loop zma-MIR167a

Accession

MI0001475

Description

Zea mays zma-MIR167a precursor miRNA

Literature search

36 open access papers mention zma-MIR167a
(148 sentences)

Sequence

27646 reads, 4228.0 reads per million, 79 experiments

ugcucuugcgaaugagUGAAGCUGCCAGCAUGAUCUAgcucugauuugguuggcaccauauuagcaggcguccacgcacagcuagacuagaguggccucgcgcgcucucgucuggucugugucucgcuuugugccugcaaaucguuguuaGAUCAUGCAUGACAGCCUCAUUccuucacaauucuggggc
.(((((((.(((.((((((.((((.((((((((((((((..(((((((...(((((.........(((((.....((((((((((((.((((((((...)).)))))).)))))).))))))..))))).)))))..)))))))..)))))))))))).)).)))).)))))).))).)).....)))))

Structure

u     -----  c   u      A    C  -            uc       guu     cauauuagc     uccac      -      u      -  c 
 gcucu     ug gaa gagUGA GCUG CA GCAUGAUCUAgc  ugauuug   ggcac         aggcg     gcacag cuagac agagug gc  
 |||||     || ||| |||||| |||| || ||||||||||||  |||||||   |||||         |||||     |||||| |||||| |||||| || u
 cgggg     ac cuu cUUACU CGAC GU CGUACUAGauug  gcuaaac   ccgug         uucgc     uguguc ggucug ucucgc cg  
-     ucuua  a   c      C    A  A            uu       -gu     --------u     ---uc      u      c      g  c 

Annotation confidence High

Genome context

3: 120490523-120490712 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR167a

Mature zma-miR167a-5p

• Accession: MIMAT0001370
• Description: Zea mays zma-miR167a-5p mature miRNA
• Sequence: 17 - UGAAGCUGCCAGCAUGAUCUA - 37
• Evidence: experimental ; Illumina [2]

Mature zma-miR167a-3p

• Accession: MIMAT0015142
• Description: Zea mays zma-miR167a-3p mature miRNA
• Sequence: 151 - GAUCAUGCAUGACAGCCUCAUU - 172
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716