Stem-loop zma-MIR169a

Accession

MI0001473

Description

Zea mays zma-MIR169a precursor miRNA

Literature search

30 open access papers mention zma-MIR169a
(221 sentences)

Sequence

600 reads, 618 reads per million, 6 experiments

uaggcucggggacuauggugCAGCCAAGGAUGACUUGCCGAucgaugugacgccucuugaucucgucgucgucagaucgucgccgaucaucGGCAAGUUGUUCUUGGCUACAccguggcuccugcuccug
((((..(((((.((((((((.(((((((((((((((((((((.(((((((((..(((((((......))))..))).))))))..)))))))))))))))))))))))).)))))))).)))))..))))

Structure

    cu     a        C                     c   --      cc   --    cu 
uagg  cgggg cuauggug AGCCAAGGAUGACUUGCCGAu gau  gugacg  ucu  ugau  c
||||  ||||| |||||||| ||||||||||||||||||||| |||  ||||||  |||  ||||   
gucc  guccu ggugccAC UCGGUUCUUGUUGAACGGcua cua  cgcugc  aga  gcug  g
    uc     c        A                     -   gc      -u   cu    cu 

Annotation confidence Not enough data

Genome context

chr3: 37346686-37346815 [+]

Mature zma-miR169a-5p

• Accession: MIMAT0001368
• Description: Zea mays zma-miR169a-5p mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGA - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR169a-3p

• Accession: MIMAT0015140
• Description: Zea mays zma-miR169a-3p mature miRNA
• Sequence: 92 - GGCAAGUUGUUCUUGGCUACA - 112
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716