Stem-loop zma-MIR159f

Accession

MI0013186

Description

Zea mays zma-MIR159f precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

31 open access papers mention zma-MIR159f
(157 sentences)

Sequence

5849 reads, 15434 reads per million, 13 experiments

gGAGCUCCUCUCAUUCCAAUGAaggguccuuccgaagggugguuccgcugcucguucaugguucccacuauccuaucucauccauguuugcgugucuucgagaggaagcggaagagauuccuguggucgccuuuugagauaggcuugugguuugcaugaccgaggagcugcaccgaccccgugcuggccgcucUUUGGAUUGAAGGGAGCUCUGc
(((((((((.(((.(((((.((..((.((..(((..(((((((.(.(((.((((.(((((....((((...((((((((...((((....)))).....((((((..((((((....)))).)).....))))))))))))))...))))....))))).)))).))).).))).)))))).)..))))..)).))))).))).)))))))))..

Structure

--         C   U     U  ag  u  uu -  aa    -   u c   g    u     guuc    uau        auccauguuugcgugucuuc      ---aa  -    g 
  gGAGCUCCU UCA UCCAA GA  gg cc  c cg  gggu ggu c gcu cucg ucaug    ccac   ccuaucuc                    gagagg     gc ggaa a
  ||||||||| ||| ||||| ||  || ||  | ||  |||| ||| | ||| |||| |||||    ||||   ||||||||                    ||||||     || ||||  
  UCUCGAGGG AGU AGGUU cu  cc gg  g gc  ccca cca g cga gagc aguac    ggug   ggauagag                    uuuucc     ug ccuu g
cG         A   U     U  cg  -  uc u  --    g   c u   g    c     guuu    uuc        --------------------      gcugg  u    a 

Annotation confidence High

Genome context

chr3: 25007834-25008048 [-]

Mature zma-miR159f-5p

• Accession: MIMAT0015310
• Description: Zea mays zma-miR159f-5p mature miRNA
• Sequence: 2 - GAGCUCCUCUCAUUCCAAUGA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR159f-3p

• Accession: MIMAT0013975
• Description: Zea mays zma-miR159f-3p mature miRNA
• Sequence: 194 - UUUGGAUUGAAGGGAGCUCUG - 214
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716