Stem-loop zma-MIR397a

Accession

MI0013229

Description

Zea mays zma-MIR397a precursor miRNA

Literature search

11 open access papers mention zma-MIR397a
(56 sentences)

Sequence

81 reads, 149 reads per million, 2 experiments

gUCAUUGAGCGCAGCGUUGAUGaugcggagcauguacgucuucccgggcuucacuuucagcuugaacgugucugcgugcaugcauaucauaaguauggauaugaguuaguauaaagaaucaUAGCCGUUAGCGCUCAUUAACU
((...(((((((.((..(((((.((((..(((((((.(.(....((((((........)))))).....).)))))))).)))))))))...))((((.(((((.((........)).))))).))))..)))))))...)).

Structure

-  CAU       -----------------------------------A  -GU     a    ga       c u -uucc      uca 
 gU   UGAGCGC                                    GC   UGAUG ugcg  gcaugua g c     cgggcu   c
 ||   |||||||                                    ||   ||||| ||||  ||||||| | |     ||||||    
 CA   ACUCGCG                                    ug   acuau acgu  cgugcgu c g     guucga   u
U  AUU       AUUGCCGAUacuaagaaauaugauugaguauaggua  aau     -    -a       - u ugcaa      cuu 

Annotation confidence Not enough data

Genome context

chr3: 183569171-183569313 [-]

Mature zma-miR397a-5p

• Accession: MIMAT0014018
• Description: Zea mays zma-miR397a-5p mature miRNA
• Sequence: 2 - UCAUUGAGCGCAGCGUUGAUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR397a-3p

• Accession: MIMAT0015352
• Description: Zea mays zma-miR397a-3p mature miRNA
• Sequence: 122 - UAGCCGUUAGCGCUCAUUAACU - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716