Stem-loop zma-MIR397b

Accession

MI0013230

Description

Zea mays zma-MIR397b precursor miRNA

Literature search

12 open access papers mention zma-MIR397b
(72 sentences)

Sequence

102 reads, 428 reads per million, 3 experiments

aUCAUUGAGCGCAGCGUUGAUGagccagccgccgugccuccccugucggcugcggcggcucaCCAGCGCUGCACUCAAUUACGc
...((((((.(((((((((.((((((.(((((...(((.........))).))))))))))).))))))))).)))))).....

Structure

--aUC      C         A      a     cgu   ucc 
     AUUGAG GCAGCGUUG UGagcc gccgc   gcc   c
     |||||| ||||||||| |||||| |||||   |||   c
     UAACUC CGUCGCGAC acucgg cggcg   cgg   u
cGCAU      A         C      -     --u   cug 

Annotation confidence Not enough data

Genome context

chr5: 84610591-84610674 [-]

Mature zma-miR397b-5p

• Accession: MIMAT0014019
• Description: Zea mays zma-miR397b-5p mature miRNA
• Sequence: 2 - UCAUUGAGCGCAGCGUUGAUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR397b-3p

• Accession: MIMAT0015353
• Description: Zea mays zma-miR397b-3p mature miRNA
• Sequence: 63 - CCAGCGCUGCACUCAAUUACG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716