Stem-loop zma-MIR171a

Accession

MI0001491

Description

Zea mays zma-MIR171a precursor miRNA

Literature search

20 open access papers mention zma-MIR171a
(52 sentences)

Sequence

89 reads, 284 reads per million, 31 experiments

gaUAUUGGCGAGGUUCAAUCAGAugauguauuuuucuuauauauaaauuugcaugcaugaaggugugaauccagugucUGAUUGAGCCGCGCCAAUAUc
((((((((((.(((((((((((((.((((((.......))))))..((((((((........)))))))).....))))))))))))).))))))))))

Structure

          A             gauguauuuuucuuauauauaa        gca 
gaUAUUGGCG GGUUCAAUCAGAu                      auuugcau   u
|||||||||| |||||||||||||                      ||||||||    
cUAUAACCGC CCGAGUUAGUcug                      uaagugug   g
          G             -----------------ugacc        gaa 

Annotation confidence Not enough data

Genome context

chr4: 239713555-239713653 [+]

Mature zma-miR171a-5p

• Accession: MIMAT0015154
• Description: Zea mays zma-miR171a-5p mature miRNA
• Sequence: 3 - UAUUGGCGAGGUUCAAUCAGA - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR171a-3p

• Accession: MIMAT0001385
• Description: Zea mays zma-miR171a-3p mature miRNA
• Sequence: 79 - UGAUUGAGCCGCGCCAAUAU - 98
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716