Stem-loop zma-MIR159k

Accession

MI0013191

Description

Zea mays zma-MIR159k precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

31 open access papers mention zma-MIR159k
(156 sentences)

Sequence

6178 reads, 19488 reads per million, 144 experiments

gGUGCUCCCUUCAAACCAAUAAacggucgaucugaugggugguacaacugcucguucaugguucccacugucccaucucaucagagagagagaagaucgugagagagcgagagaugcuugagaugggcuugugguuugcaugaccgaggagcugcaucguccccuucguugaccgcugUUUGGAUUGAAGGGAGCUCUGc
((.(((((((((((.((((..(.((((((((..((.(((((((.((.((.((((.(((((....((((...(((((((((........((......((((......))))......)))))))))))...))))....))))).)))).)).)).)))).)))..)))))))))).)..)))).))))))))))).))..

Structure

--  U           A    UA a        cu  -u   -    a  a  g    u     guuc    ugu         ucagagag  agaaga    ga 
  gG GCUCCCUUCAA CCAA  A cggucgau  ga  ggg uggu ca cu cucg ucaug    ccac   cccaucuca        ag      ucgu  g
  || ||||||||||| ||||  | ||||||||  ||  ||| |||| || || |||| |||||    ||||   |||||||||        ||      ||||   
  UC CGAGGGAAGUU GGUU  u gccaguug  cu  ccc gcua gu ga gagc aguac    ggug   ggguagagu        uc      agcg  a
cG  U           A    Ug c        --  uc   u    c  c  g    c     guuu    uuc         --------  guagag    ag 

Annotation confidence Not enough data

Genome context

chr8: 10947058-10947257 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR159k

Mature zma-miR159k-5p

• Accession: MIMAT0015315
• Description: Zea mays zma-miR159k-5p mature miRNA
• Sequence: 2 - GUGCUCCCUUCAAACCAAUAA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR159k-3p

• Accession: MIMAT0013980
• Description: Zea mays zma-miR159k-3p mature miRNA
• Sequence: 179 - UUUGGAUUGAAGGGAGCUCUG - 199
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716