Stem-loop sbi-MIR169q

Accession

MI0013255

Description

Sorghum bicolor sbi-MIR169q precursor miRNA MIR169

Gene
family

RF03311; MIR169

Literature search

5 open access papers mention sbi-MIR169q
(25 sentences)

Sequence

16172 reads, 812.0 reads per million, 50 experiments

uUAGCCAAGAAUGGCUUGCCUAUCUccauuauuuuguucaucgaugcaggccuagggaucgucauggaugaaauguggaugaUGGCAUCCAUUCUUGGCUAAGU
((((((((((((((..((((.((((((((.(((((((((((((((.(........).))))..)))))))))))))))).))))))).))))))))))))))..

Structure

--              CU    U   -     u           --    g agg 
  uUAGCCAAGAAUGG  UGCC AUC Uccau auuuuguucau  cgau c   c
  ||||||||||||||  |||| ||| ||||| |||||||||||  |||| |    
  AAUCGGUUCUUACC  ACGG Uag aggug uaaaguaggua  gcua g   c
UG              -U    -   u     -           cu    g gau 

Annotation confidence High

Genome context

chr8: 12317865-12317968 [-]

Mature sbi-miR169q-5p

• Accession: MIMAT0014044
• Description: Sorghum bicolor sbi-miR169q-5p mature miRNA
• Sequence: 2 - UAGCCAAGAAUGGCUUGCCUAUCU - 25
• Evidence: not_experimental

Mature sbi-miR169q-3p

• Accession: MIMAT0056449
• Description: Sorghum bicolor sbi-miR169q-3p mature miRNA
• Sequence: 83 - UGGCAUCCAUUCUUGGCUAAGU - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716